A ferroptosis-related gene signature for graft loss prediction following renal allograft.

Abstract

Allogeneic kidney transplantation (renal allograft) is the most effective treatment for advanced kidney disease. Previous studies have indicated that ferroptosis participates in the progression of acute kidney injury and renal transplant failure. However, few studies have evaluated the prognostic value of ferroptosis on renal transplantation outcomes. In this study, a total of 32 differentially expressed ferroptosis-related genes (DFGs) were identified, which were mainly enriched in infection-related pathways. Next, a ferroptosis-related gene signature, including GA-binding protein transcription factor subunit beta 1 (GABPB1), cyclin-dependent kinase inhibitor 1A (CDKN1A), Toll-like receptor 4 (TLR4), C-X-C motif chemokine ligand 2 (CXCL2), caveolin 1 (CAV1), and ribonucleotide reductase subunit M2 (RRM2), was constructed to predict graft loss following renal allograft. Moreover, receiver operating characteristic (ROC) curves (area under the ROC curve [AUC] > 0.8) demonstrated the accuracy of the gene signature and univariate Cox analysis suggested that the gene signature could play an independent role in graft loss (p < 0.05). Furthermore, the nomogram and calibration plots also indicated the good prognostic capability of the gene signature. Finally, immune-related and cytokine signaling pathways were mostly enriched in renal allograft patients with poor outcomes. Considered together, a ferroptosis-related gene signature and nomogram based on DFGs were created to predict the 1-, 2- and 3- year graft loss probability of renal allograft patients.The gene signature could serve as a valuable biomarker for predicting graft loss, contributing to improving the outcome of allogeneic kidney transplantation.

• Authors: Zhenlei Fan, Tao Liu, Hanfei Huang, Jie Lin, Zhong Zeng
• Journal: Bioengineered (Bioengineered) Vol. 12 Issue 1 Pg. 4217-4232 (12 2021) ISSN: 2165-5987 [Electronic] United States
• PMID: 34338139 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)

Topics

• Ferroptosis (genetics)
• Graft Rejection (diagnosis, epidemiology, genetics)
• Humans
• Kidney Transplantation (statistics & numerical data)
• Nomograms
• Prognosis
• Transcriptome (genetics)
• Transplantation, Homologous