Collagen 1A1 (COL1A1) and Collagen11A1(COL11A1) as diagnostic biomarkers in Breast, colorectal and gastric cancers.

Abstract

PURPOSE:

Collagen family genes (CFGs) play a significant role in the pathogenesis of cancers. This study aimed to evaluate changes in the expression levels (Els) of CFGs related to epithelial-mesenchymal transition (EMT) and metastasis in gastric (GC), breast (BC), and colorectal (CRC) cancers to introduce these genes as potential diagnostic biomarkers for these three types of cancer.

METHODS:

The Cancer Genome Atlas (TCGA) examined ELS changes in CFGs associated with EMT and metastasis to determine their diagnostic value for GC, BC, and CRC. InteractiVenn was used to find genes shared by these three cancers. The biomarker role of CFGs was determined using the receiver operating characteristic (ROC) analysis. GC, BC, and CRC samples were analyzed using the RT-qPCR method to verify the bioinformatics results and evaluate the EL of the selected genes as biomarkers for these cancers.

RESULTS:

The in-silico results showed a significant increase in the EL of several CFGs involved in EMT and metastasis in GC, BC, and CRC samples compared to healthy samples. Six common genes (COL11A1, COL12A1, COL1A1, COL1A2, COL5A1, and COL5A2) showed significantly increased in these three cancers, therebysupporting their oncogenic role. Furthermore, the biomarker-related analyses indicated that COL11A1 and COL1A1 were common diagnostic biomarkers for the three cancers. The RT-qPCR method confirmed that the ELs of COL11A1 and COL1A1 in the GC, BC, and CRC samples increased significantly compared to the adjacent normal samples.

CONCLUSION:

CFGs in EMT and metastasis of GC, BC, and CRC are strong common diagnostic biomarkers for these cancers.

• Authors: Niloufar Salimian, Maryam Peymani, Kamran Ghaedi, Mehrdad Hashemi, Ebrahim Rahimi
• Journal: Gene (Gene) Vol. 892 Pg. 147867 (Jan 20 2024) ISSN: 1879-0038 [Electronic] Netherlands
• PMID: 37783295 (Publication Type: Journal Article)
• Copyright: Copyright © 2023 Elsevier B.V. All rights reserved.

Chemical References

• Biomarkers
• Biomarkers, Tumor
• COL11A1 protein, human
• Collagen
• Collagen Type I, alpha2 Subunit
• Collagen Type XI
• COL1A1 protein, human

Topics

• Humans
• Biomarkers
• Biomarkers, Tumor (genetics)
• Collagen
• Collagen Type XI (genetics)
• Colorectal Neoplasms (diagnosis, genetics, metabolism)
• Stomach Neoplasms (diagnosis, genetics)