Targeted
therapy with a
tyrosine kinase inhibitor (TKI) such as
imatinib is effective in treating
gastrointestinal stromal tumor (GIST), but it is rarely curative. Despite the presence of a robust immune CD8+ T-cell infiltrate, combining a TKI with
immune-checkpoint blockade (ICB) in advanced GIST has achieved only modest effects. To identify limitations imposed by
imatinib on the antitumor immune response, we performed bulk
RNA sequencing (
RNA-seq), single-cell
RNA-seq, and flow cytometry to phenotype CD8+ T-cell subsets in a genetically engineered mouse model of GIST.
Imatinib reduced the frequency of effector CD8+ T cells and increased the frequency of naïve CD8+ T cells within mouse GIST, which coincided with altered
tumor chemokine production, CD8+ T-cell recruitment, and reduced CD8+ T-cell intracellular PI3K signaling.
Imatinib also failed to induce intratumoral
T-cell receptor (TCR) clonal expansion. Consistent with these findings, human GISTs sensitive to
imatinib harbored fewer effector CD8+ T cells but more naïve CD8+ T cells. Combining an
IL15 superagonist (IL15SA) with
imatinib restored intratumoral effector CD8+ T-cell function and CD8+ T-cell intracellular PI3K signaling, resulting in greater
tumor destruction. Combination
therapy with IL15SA and ICB resulted in the greatest
tumor killing and maintained an effector CD8+ T-cell population in the presence of
imatinib. Our findings highlight the impact of oncogene inhibition on intratumoral CD8+ T cells and support the use of agonistic T-cell
therapy during TKI and/or ICB administration.