Bioinformatics Analysis for Constructing a Six-Immune-Related Long Noncoding RNA Signature as a Prognostic Model of Hepatocellular Carcinoma.

Abstract

The present study was aimed at identifying the potential prognostic biomarkers of the immune-related long noncoding RNA (IRL) signature for patients with hepatocellular carcinoma (HCC). RNA-sequencing data and clinical information about HCC were obtained from The Cancer Genome Atlas. The IRLs were determined with regard to the coexpression of immune-related genes and differentially expressed lncRNAs. The survival IRLs were obtained using the univariate Cox analysis. Subsequently, the prognosis model was constructed via the multivariate Cox analysis. Subsequently, functional annotation was conducted using Gene Set Enrichment Analysis (GSEA) and principal component analysis (PCA). In total, 341 IRLs were identified, and 6 IRLs were found to have a highly significant association with the prognosis of patients with HCC. The immune prognosis model was constructed with these 6 IRLs (AC099850.4, negative regulator of antiviral response, AL031985.3, PRRT3-antisense RNA1, AL365203.2, and long intergenic nonprotein coding RNA 1224) using the multivariate Cox regression analysis. In addition, immune-related prognosis signatures were confirmed as an independent prognostic factor. The association between prognostic signatures and immune infiltration indicated that the 6 lncRNAs could reflect the immune status of the tumor. Collectively, the present study demonstrates that six-lncRNA signatures may be potential biomarkers to predict the prognosis of patients with HCC.

• Authors: Jue Wang, Zongrui Jin, Guolin Wu, Jilong Wang, Banghao Xu, Hai Zhu, Ya Guo, Zhang Wen
• Journal: BioMed research international (Biomed Res Int) Vol. 2022 Pg. 2093437 ( 2022) ISSN: 2314-6141 [Electronic] United States
• PMID: 35845962 (Publication Type: Journal Article)
• Copyright: Copyright © 2022 Jue Wang et al.

Chemical References

• Biomarkers, Tumor
• RNA, Long Noncoding

Topics

• Biomarkers, Tumor (genetics)
• Carcinoma, Hepatocellular (pathology)
• Computational Biology
• Gene Expression Regulation, Neoplastic
• Humans
• Kaplan-Meier Estimate
• Liver Neoplasms (pathology)
• Prognosis
• RNA, Long Noncoding (genetics)