Signature involved in immune-related lncRNA pairs for predicting the immune landscape of cervical cancer.

Abstract

BACKGROUND:

Immune-related long non-coding RNAs (irlncRNAs) are known to hold great promise as superior biomarkers for cervical cancer-related immunotherapeutic response and the tumor immune microenvironment. Here, we constructed a prognostic signature based on irlncRNA pairs (IRLPs).

METHODS:

The samples were downloaded from The Cancer Genome Atlas and the Genotype-Tissue Expression databases. The least absolute shrinkage and selection operator Cox regression was performed to construct the prognostic model. Receiver operating characteristic (ROC) curve and nomogram were plotted to validate accuracy of the model. Next, we estimated the immune cell infiltration and the correlation between risk score and the expression of genes related to immune checkpoint. Finally, we calculated the score of the Tumor Immune Dysfunction and Exclusion (TIDE) algorithm and the half maximal inhibitory concentration of the chemotherapeutic agent to evaluate the response to immunotherapy and chemotherapy.

RESULTS:

We constructed a prognostic signature that consisted of 11 irlncRNAs. The area under the curve values of the 1-, 3-, and 5-year ROC curves were 0.844, 0.891, and 0.871, respectively. The expression of CTLA-4, HAVCR2, IDO1, LAG3, and PDCD1 were negatively correlated with risk scores. The score of TIDE in the high-risk group was significantly higher than in the low-risk group (P < 0.01). Patients in the low-risk subgroup were more sensitive to chemotherapeutic agents, such as axitinib and docetaxel, whereas patients in the low-risk subgroup were more sensitive to mitomycin C.

CONCLUSION:

Our study highlighted the value of the 11 IRLPs signatures to predict the prognosis and the response to immunotherapy and chemotherapeutics for patients with cervical cancer.

• Authors: Xueting Liu, Zhao Wang, Le Wang, Ying Wang, Yuan Wang, Shanshan Yang, Yunyan Zhang
• Journal: The International journal of biological markers (Int J Biol Markers) Vol. 37 Issue 2 Pg. 191-199 (Jun 2022) ISSN: 1724-6008 [Electronic] United States
• PMID: 35435763 (Publication Type: Journal Article)

Chemical References

• RNA, Long Noncoding

Topics

• Female
• Humans
• Immunotherapy
• Prognosis
• RNA, Long Noncoding (genetics, metabolism)
• Tumor Microenvironment (genetics)
• Uterine Cervical Neoplasms (genetics)