Bioinformatics Analysis and Experimental Study of Exonuclease 1 Gene in Lung Adenocarcinoma.

Abstract

The objective of this study is to examine the role of Human Exonuclease 1(EXO1) gene in the diagnosis and prognosis of lung adenocarcinoma (LUAD), and predict the signal pathways EXO1 involved in. The clinical parameters and EXO1 expression datasets of LUAD patients were obtained from The Cancer Genome Atlas (TCGA), Oncomine and Gene Expression Omnibus (GEO) database. Wilcoxon rank-sum test was performed to determine whether EXO1 expression was upregulated in LUAD. The correlation between EXO1 expression and clinicopathological parameters was analyzed by Chi-square test, and Kaplan-Meier survival analysis and COX regression models were adopted to analyze and verify the correlation of EXO1 expression with OS of LUAD patients for the exploration of prognostic value of EXO1 in LUAD patients. The signaling pathway related to EXO1 was predicted by gene set enrichment analysis (GSEA). In addition, sera from LUAD patients and healthy subjects were collected, and real-time fluorescence quantitative polymerase chain reaction (RT-qPCR) was conducted to detect EXO1 expression. EXO1 expression was upregulated in LUAD patients with respect to normal individuals. EXO1 expression was negatively correlated with the prognosis and thus could independently predict the prognosis of LUAD patients. EXO1 gene was involved in 128 signal pathways, of which 9 pathways may be closely related. EXO1 was highly expressed in the blood of LUAD patients. High EXO1 expression can serve as an independent risk factor for poor prognosis, and the expression of serum EXO1 has certain diagnostic value for LUAD.

• Authors: Shan Wang, Weiguo Cai, Jianyu Li, Wenting An, Hui Zheng, Meiyan Liao
• Journal: Biochemical genetics (Biochem Genet) Vol. 60 Issue 6 Pg. 1934-1945 (Dec 2022) ISSN: 1573-4927 [Electronic] United States
• PMID: 35169964 (Publication Type: Journal Article)
• Copyright: © 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.

Chemical References

• EXO1 protein, human
• Exodeoxyribonucleases
• DNA Repair Enzymes

Topics

• Humans
• Adenocarcinoma of Lung (genetics, metabolism, pathology)
• Computational Biology (methods)
• Gene Expression Regulation, Neoplastic
• Lung Neoplasms (enzymology, genetics, pathology)
• Exodeoxyribonucleases (genetics)
• DNA Repair Enzymes (genetics)