Targeted protein degradation in antibacterial drug discovery?

Abstract

Drug induced degradation of a target protein is a novel concept in drug discovery. Traditionally drugs modulate activity, as opposed to abundance, of their targets. Degradation inducing ligands act catalytically. Thus, one advantage of target degradation over the classical on-target mechanism is that lower drug concentration may be sufficient to cause the desired cellular effects. The first promoters of target degradation were discovered unintentionally: it turned out that some drugs 'accidently' promote degradation of their target by the cellular proteolytic machinery. Elegant methods were developed to target specific proteins of interest for degradation, thus enabling the rational discovery of degradation inducers. The application of targeted degradation has so far been limited to human cells. Recently, we discovered that an antibacterial drug, the anti-tuberculosis antibiotic pyrazinamide, functions as a promotor of degradation of its bacterial target. Increasing antimicrobial resistance makes the discovery of novel antibiotics more urgent than ever. Can rational target degradation be applied for the discovery of anti-bacterials? Here, we first discuss briefly some historic examples and then recent approaches in rational target degradation for human diseases. Then, we describe how the first anti-bacterial target degradation promoter pyrazinamide triggers removal of its target. Efforts are under way to exploit this specific mechanistic knowledge for the discovery of next generation pyrazinamide. We end with the big - and open - question whether targeted protein degradation as an approach to anti-bacterial drug discovery can be generalized, similar to what has been achieved in the area of drug discovery for human diseases.

• Authors: Pooja Gopal, Thomas Dick
• Journal: Progress in biophysics and molecular biology (Prog Biophys Mol Biol) Vol. 152 Pg. 10-14 (05 2020) ISSN: 1873-1732 [Electronic] England
• PMID: 31738980 (Publication Type: Journal Article, Research Support, N.I.H., Extramural, Review)
• Copyright: Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Chemical References

• Antibiotics, Antitubercular
• Bacterial Proteins
• Pyrazinamide

Topics

• Antibiotics, Antitubercular (chemistry, pharmacology)
• Bacterial Proteins (metabolism)
• Drug Discovery
• Drug Resistance, Bacterial
• Humans
• Hydrophobic and Hydrophilic Interactions
• Molecular Targeted Therapy
• Protein Binding
• Proteolysis (drug effects)
• Pyrazinamide (chemistry, pharmacology)
• Tuberculosis (drug therapy)