Abstract |
Rapid amplification of cDNA ends (RACE) has widely been used to determine both ends of the cDNA from its partial sequence. Conventionally, 5'- and 3'-RACE products were ligated at a restriction site in the overlap region to reconstruct the full-length cDNA; however, reconstruction is difficult if no appropriate restriction enzymes are available. Here, we report a novel method to reconstruct full-length cDNA with DNA polymerase. Instead of usual PCR, chain reactions were avoided and the elongation time was shortened, which enables non-specific products or undesired point mutations to be minimized. We successfully reconstructed and TA-cloned a full-length cDNA of echinoderm microtubule-associated protein-like 4 (EML4)-anaplastic lymphoma kinase (ALK) fusion gene variant 2 from RACE products obtained from a surgically resected lung adenocarcinoma sample. We also evaluated some parameters to provide recommendations for this new method.
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Authors | Mitsuhiro Sunohara, Masanori Kawakami, Hidenori Kage, Kousuke Watanabe, Noriko Emoto, Takahide Nagase, Nobuya Ohishi, Daiya Takai |
Journal | Biotechnology letters
(Biotechnol Lett)
Vol. 33
Issue 7
Pg. 1301-7
(Jul 2011)
ISSN: 1573-6776 [Electronic] Netherlands |
PMID | 21384194
(Publication Type: Journal Article, Research Support, Non-U.S. Gov't)
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Chemical References |
- DNA Primers
- DNA, Complementary
- DNA-Directed DNA Polymerase
- DNA Ligases
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Topics |
- DNA Ligases
(metabolism)
- DNA Primers
(genetics)
- DNA, Complementary
(genetics, metabolism)
- DNA-Directed DNA Polymerase
(metabolism)
- Molecular Biology
(methods)
- Nucleic Acid Amplification Techniques
(methods)
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