The forces that govern clonal selection during the genesis and maintenance of specific T cell responses are complex, but amenable to decryption by interrogation of constituent clonotypes within the
antigen-experienced T cell pools. Here, we used point-mutated
peptide-major histocompatibility complex class I (pMHCI)
antigens, unbiased TCRB gene usage analysis, and polychromatic flow cytometry to probe directly ex vivo the clonal architecture of
antigen-specific CD8(+) T cell populations under conditions of persistent exposure to structurally stable virus-derived
epitopes. During
chronic infection with cytomegalovirus and Epstein-Barr virus, CD8(+) T cell responses to immunodominant
viral antigens were oligoclonal, highly skewed, and exhibited diverse clonotypic configurations; TCRB CDR3 sequence analysis indicated positive selection at the
protein level. Dominant clonotypes demonstrated high intrinsic
antigen avidity, defined strictly as a physical parameter, and were preferentially driven toward terminal differentiation in phenotypically heterogeneous populations. In contrast, subdominant clonotypes were characterized by lower intrinsic avidities and proportionately greater dependency on the pMHCI-CD8 interaction for
antigen uptake and functional sensitivity. These findings provide evidence that interclonal competition for
antigen operates in human T cell populations, while preferential CD8 coreceptor compensation mitigates this process to maintain clonotypic diversity.
Vaccine strategies that reconstruct these biological processes could generate T cell populations that mediate optimal delivery of
antiviral effector function.