Redox-Controlled Energy Transfer Quenching of Fluorophore-Labeled DNA SAMs Enables In Situ Study of These Complex Electrochemical Interfaces.

Abstract

Interfaces modified by a molecular monolayer can be challenging to study, particularly in situ, requiring novel approaches. Coupling electrochemical and optical approaches can be useful when signals are correlated. Here we detail a methodology that uses redox electrochemistry to control surface-based fluorescence intensity for detecting DNA hybridization and studying the uniformity of the surface response. A mixed composition single-strand DNA SAM was prepared using potential-assisted thiol exchange with two alkylthiol-modified ssDNAs that were either labeled with a fluorophore (AlexaFluor488) or a methylene blue (MB) redox tag. A significant change in fluorescence was observed when reducing MB to colorless leuco-MB. In situ fluorescence microscopy on a single-crystal gold bead electrode showed that fluorescence intensity depended on (1) the potential controlling the oxidation state of MB, (2) the surface density of DNA, (3) the MB:AlexFluor488 ratio in the DNA SAM, and (4) the local environment around the DNA SAM. MB efficiently quenched AlexaFluor488 fluorescence. Reduction of MB showed a significant increase in fluorescence resulting from a decrease in quenching or energy transfer efficiency. Hybridization of DNA SAMs with its unlabeled complement showed a large increase in fluorescence due to MB reduction for surfaces with sufficient DNA coverage. Comparing electrochemical-fluorescence measurements to electrochemical (SWV) measurements showed an improvement in detection of a small fraction of hybridized DNA SAM for surfaces with optimal DNA SAM composition and coverage. Additionally, this coupled electrochemical redox-fluorescence microscopy method can measure the spatial heterogeneity of electron-transfer kinetics and the influence of the local interfacial environment.

• Authors: Tianxiao Ma, Adrian Jan Grzȩdowski, Thomas Doneux, Dan Bizzotto
• Journal: Journal of the American Chemical Society (J Am Chem Soc) Vol. 144 Issue 51 Pg. 23428-23437 (12 28 2022) ISSN: 1520-5126 [Electronic] United States
• PMID: 36516982 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)

Chemical References

• DNA
• DNA, Single-Stranded
• Fluorescent Dyes
• Gold
• Methylene Blue

Topics

• Oxidation-Reduction
• Electron Transport
• DNA (chemistry)
• Electrochemical Techniques (methods)
• DNA, Single-Stranded
• Fluorescent Dyes (chemistry)
• Gold (chemistry)
• Methylene Blue (chemistry)
• Electrodes
• Energy Transfer