Mechanism of COVID-19-Related Proteins in Spinal Tuberculosis: Immune Dysregulation.

Abstract

Purpose:

The purpose of this article was to investigate the mechanism of immune dysregulation of COVID-19-related proteins in spinal tuberculosis (STB).

Methods:

Clinical data were collected to construct a nomogram model. C-index, calibration curve, ROC curve, and DCA curve were used to assess the predictive ability and accuracy of the model. Additionally, 10 intervertebral disc samples were collected for protein identification. Bioinformatics was used to analyze differentially expressed proteins (DEPs), including immune cells analysis, Gene Ontology (GO) and KEGG pathway enrichment analysis, and protein-protein interaction networks (PPI).

Results:

The nomogram predicted risk of STB ranging from 0.01 to 0.994. The C-index and AUC in the training set were 0.872 and 0.862, respectively. The results in the external validation set were consistent with the training set. Immune cells scores indicated that B cells naive in STB tissues were significantly lower than non-TB spinal tissues. Hub proteins were calculated by Degree, Closeness, and MCC methods. The main KEGG pathway included Coronavirus disease-COVID-19. There were 9 key proteins in the intersection of COVID-19-related proteins and hub proteins. There was a negative correlation between B cells naive and RPL19. COVID-19-related proteins were associated with immune genes.

Conclusion:

Lymphocytes were predictive factors for the diagnosis of STB. Immune cells showed low expression in STB. Nine COVID-19-related proteins were involved in STB mechanisms. These nine key proteins may suppress the immune mechanism of STB by regulating the expression of immune genes.

• Authors: Liyi Chen, Chong Liu, Tuo Liang, Zhen Ye, Shengsheng Huang, Jiarui Chen, Xuhua Sun, Ming Yi, Chenxing Zhou, Jie Jiang, Tianyou Chen, Hao Li, Wuhua Chen, Hao Guo, Wenkang Chen, Yuanlin Yao, Shian Liao, Chaojie Yu, Shaofeng Wu, Binguang Fan, Zhaoping Gan, Xinli Zhan
• Journal: Frontiers in immunology (Front Immunol) Vol. 13 Pg. 882651 ( 2022) ISSN: 1664-3224 [Electronic] Switzerland
• PMID: 35720320 (Publication Type: Journal Article, Research Support, Non-U.S. Gov't)
• Copyright: Copyright © 2022 Chen, Liu, Liang, Ye, Huang, Chen, Sun, Yi, Zhou, Jiang, Chen, Li, Chen, Guo, Chen, Yao, Liao, Yu, Wu, Fan, Gan and Zhan.

Topics

• COVID-19
• Computational Biology (methods)
• Gene Ontology
• Humans
• Protein Interaction Maps (genetics)
• Tuberculosis, Spinal