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Highly potent and selective ectonucleotide pyrophosphatase/phosphodiesterase I inhibitors based on an adenosine 5'-(α or γ)-thio-(α,β- or β,γ)-methylenetriphosphate scaffold.

Abstract
Aberrant nucleotide pyrophosphatase/phosphodiesterase-1 (NPP1) activity is associated with chondrocalcinosis, osteoarthritis, and type 2 diabetes. The potential of NPP1 inhibitors as therapeutic agents, and the scarceness of their structure-activity relationship, encouraged us to develop new NPP1 inhibitors. Specifically, we synthesized ATP-α-thio-β,γ-CH2 (1), ATP-α-thio-β,γ-CCl2 (2), ATP-α-CH2-γ-thio (3), and 8-SH-ATP (4) and established their resistance to hydrolysis by NPP1,3 and NTPDase1,2,3,8 (<5% hydrolysis) (NTPDase = ectonucleoside triphosphate diphosphohydrolase). Analogues 1-3 at 100 μM inhibited thymidine 5'-monophosphate p-nitrophenyl ester hydrolysis by NPP1 and NPP3 by >90% and 23-43%, respectively, and only slightly affected (0-40%) hydrolysis of ATP by NTPDase1,2,3,8. Analogue 3 is the most potent NPP1 inhibitor currently known, Ki = 20 nM and IC50 = 0.39 μM. Analogue 2a is a selective NPP1 inhibitor with Ki = 685 nM and IC50 = 0.57 μM. Analogues 1-3 were found mostly to be nonagonists of P2Y1/P2Y2/P2Y11 receptors. Docking analogues 1-3 into the NPP1 model suggested that activity correlates with the number of H-bonds with binding site residues. In conclusion, we propose analogues 2a and 3 as highly promising NPP1 inhibitors.
AuthorsYael Nadel, Joanna Lecka, Yocheved Gilad, Gal Ben-David, Daniel Förster, Georg Reiser, Sarah Kenigsberg, Jean Camden, Gary A Weisman, Hanoch Senderowitz, Jean Sévigny, Bilha Fischer
JournalJournal of medicinal chemistry (J Med Chem) Vol. 57 Issue 11 Pg. 4677-91 (Jun 12 2014) ISSN: 1520-4804 [Electronic] United States
PMID24846781 (Publication Type: Journal Article)
Chemical References
  • Organophosphates
  • Organophosphonates
  • Organothiophosphates
  • Purinergic P2Y Receptor Agonists
  • Adenosine Triphosphate
  • Phosphoric Diester Hydrolases
  • ectonucleotide pyrophosphatase phosphodiesterase 1
  • Pyrophosphatases
Topics
  • Adenosine Triphosphate (analogs & derivatives, chemical synthesis, pharmacology)
  • Animals
  • Binding Sites
  • COS Cells
  • Catalytic Domain
  • Cell Line, Tumor
  • Chlorocebus aethiops
  • Humans
  • Hydrogen Bonding
  • Hydrolysis
  • Molecular Docking Simulation
  • Organophosphates (chemical synthesis, pharmacology)
  • Organophosphonates (chemical synthesis, pharmacology)
  • Organothiophosphates (chemical synthesis, pharmacology)
  • Phosphoric Diester Hydrolases
  • Purinergic P2Y Receptor Agonists (chemical synthesis, pharmacology)
  • Pyrophosphatases (antagonists & inhibitors)
  • Stereoisomerism
  • Structure-Activity Relationship

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